I'm inclined to think the illustration was made to show tenons projecting through to the top surface merely to convey the fact there WERE tenons, which couldn't be clearly shown otherwise.
Good point. Perhaps that also suggests that, at the time the sketch was made, all the lintels were in place.
IMO the actual tenons are actually pretty sophisticated since their "bulbous cone" shape allows for considerable subsequent structural movement without structural failure. I reckon they were very clever people with a long term view.
I'm sure you're right but just one niggling little question - why bother with mortise and tenon joints at all? Wouldn't the weight of the lintels on all of the uprights have provided sufficient stability for the structure? Dunno for sure but even in earthquake-prone countries like Egypt, Greece and Malta mortise and tenon joints weren't used in ancient structures. Seems like an awful lot of trouble to go to at Stonehenge just to replicate earlier wooden structures in stone. Do the mortise and tenon joints at Stonehenge really make that much difference to the stability of the structure?